Welcome to Qiita’s documentation!

Qiita (canonically pronounced cheetah) is a software package intended for analysis and administration of multi-omics datasets.

Qiita provides a free and open platform for users to:

  1. Easily share and reuse existing data-sets in the form of studies.
  2. Perform analyses (by combining one or more studies/data-sets) using published and unpublished data that meet the standards as described by this documentation.
  3. Easily interface with the EBI repository for automated deposition. Query and interact with Qiita data programmatically.

Beginner’s Guides: The latests tutorials can be found in: CMI Qiita/GNPS workshop pages.

Looking for information about getting started? Please see the document here:

Looking for information about how to process your data? Please see the document here:

Looking for information about submitting your files to EBI? Please see the document here:

Looking for comparable studies? Please see the document here:

Looking for information about analyzing your data? Please see the document here:

Looking for available guides? Please see these documents:

If you intend to deploy or develop Qiita we recommend that you have a look at the following documents: